Construction of a dataset for the gene nrLSU to support the identification of cantharellus at Langbian Mountain, Lam Dong

Authors

  • Trinh Van Hanh
    University of Science, VNU-HCM, VN
  • Vu Tien Luyen
    University of Science, VNU-HCM, VN
  • Pham Huu Hung
    Tay Nguyen Institute of Scientific Research, Vietnam Academy of Science and Technology, VN
  • Truong Binh Nguyen
    Da Lat University, VN
  • Tran Duc Vinh
    Ho Chi Minh City Open University, VN
  • Lao Duc Thuan
    Ho Chi Minh City Open University, VN
  • Le Huyen Ai Thuy
    Ho Chi Minh City Open University, VN

DOI:

10.46223/HCMCOUJS.tech.en.8.2.342.2018

Keywords:

Cantharellus; Large Subunit (LSU) of rDNA; the phylogenetic tree

Abstract

Fungal species of Cantharellales order are found worldwide including Europe, Africa, Asia, and North America. This clade includes two smaller, separate, but closely related genera Cantharellus and Craterellus. Cantharellus was firstly identified in the middle of the 17th century. Besides traditional classification based on morphology, molecular phylogeny of the nuclear ribosomal large subunit gene (nrLSU) can be an effective tool to provide more information during species identification for this group. In this current report, a dataset of the nrLSU gene including 60 sequences of Cantharellus species and 1 sequence belonging to Craterellus (outgroup), was obtained from Genbank. Phylogenetic analyses by MEGA 6.0 showed a monophyletic relationship between the six well-established clades, namely Cantharellus (Clade 1), Rubrinus (Clade 2), Cinnabarinus (Clade 3), Parvocantharellus (Clade 4), Pseudocantharellus (Clade 5) and subgenus Afrocantharellus (Clade 6) similar to that of morphological classification. Therefore, this dataset is efficient to support the identification of the fungal samples, collected at the Langbian Mountain, Lam Dong.

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References

Arora, D., & Dunham, S. M. (2008). A new, commercially valuable chanterelle species, Cantharellus californicus sp. nov., associated with live Oak in California, USA. Economic Botany, 62, 376-391.

Buyck, B., & Hofstetter, V. (2011). The contribution of tef-1 sequences to species delimitation in the Cantharellus cibarius complex in the southeastern USA. Fungal Divers, 49, 35-46.

Buyck, B., Kauff, F., Eyssartier, G., Couloux, A., & Hofstetter, V. (2013). Molecular evidence for novel Cantharellus (Cantharellales, Basidiomycota) from tropical African miombo woodland and a key to all tropical African chanterelles. Fungal Diversity, 58, 281-298.

Buyck, B., Kauff, F., Eyssartier, G., Couloux, A., & Hofstetter, V. (2014). A multilocus phylogeny for worldwide Cantharellus (Cantharellales, Agaricomycetidae). Fungal Diversity, 64, 101-121.

Dahlman, M., Danell, E., & Spatafora, J. W. (2000). Molecular systematics of Craterellus: Cladistic analysis of nuclear LSU rDNA sequence data. Mycological Research, 104(4), 388-394.

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Received: 03-06-2020
Accepted: 03-06-2020
Published: 01-09-2018

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How to Cite

Hanh, T. V., Luyen, V. T., Hung, P. H., Nguyen, T. B., Vinh, T. D., Thuan, L. D., & Thuy, L. H. A. (2018). Construction of a dataset for the gene nrLSU to support the identification of cantharellus at Langbian Mountain, Lam Dong. HO CHI MINH CITY OPEN UNIVERSITY JOURNAL OF SCIENCE - ENGINEERING AND TECHNOLOGY, 8(2), 14–21. https://doi.org/10.46223/HCMCOUJS.tech.en.8.2.342.2018